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General Information
Prof. Wael Badawy
Department of Computing and Information Systems Umm Al Qura University, Canada
I'm happy to take on the position of editor in chief of IJCTE. We encourage authors to submit papers concerning any branch of computer theory and engineering.
IJCTE 2014 Vol.6(4): 307-312 ISSN: 1793-8201
DOI: 10.7763/IJCTE.2014.V6.880

Simulation of Cell Signaling Communications Using Event-Driven Algorithms

Daniel Huertas González and Alfonso Rojas Espinosa
Abstract—In this paper we present two implementations of event-driven algorithms for simulating molecular dynamics using the Omnet++ Simulation Framework and its Future Event Set (FES) implementation. The first one uses a cell-linked list algorithm. The second one extends the cell-linked list algorithm incorporating a Verlet neighbor list algorithm. We also present results and compare both algorithms over a set of different scenarios. Finally, we discuss the advantages of using the Omnet++ Simulation Framework and the implemented algorithm for simulating cell-signaling communications.

Index Terms—Event-driven, molecular dynamics, Omnet++, particle system.

D. Huertas is with the Polytechnic University of Catalonia, Barcelona, Spain (e-mail: huertas.dani@gmail.com).
A. Rojas is with the Telematics Engineering (ENTEL) Department, Barcelona Telecommunication Engineering Technical School (ETSETB), Polytechnic University of Catalonia (UPC), Barcelona, Spain (e-mail: alfonso@entel.upc.edu).


Cite:Daniel Huertas González and Alfonso Rojas Espinosa, "Simulation of Cell Signaling Communications Using Event-Driven Algorithms," International Journal of Computer Theory and Engineering vol. 6, no. 4, pp. 307-312, 2014.

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